rs61733458
From SNPedia
Orientation | plus |
Stabilized | plus |
Geno | Mag | Summary |
---|---|---|
(A;A) | 1 | probably a benign genotype |
(A;G) | 1 | probably a benign allele |
(G;G) | 0 | common in clinvar |
Reference | GRCh38 38.1/141 |
Chromosome | 3 |
Position | 149198428 |
Gene | CP |
is a | snp |
is | mentioned by |
dbSNP | rs61733458 |
dbSNP (classic) | rs61733458 |
ClinGen | rs61733458 |
ebi | rs61733458 |
HLI | rs61733458 |
Exac | rs61733458 |
Gnomad | rs61733458 |
Varsome | rs61733458 |
LitVar | rs61733458 |
Map | rs61733458 |
PheGenI | rs61733458 |
Biobank | rs61733458 |
1000 genomes | rs61733458 |
hgdp | rs61733458 |
ensembl | rs61733458 |
geneview | rs61733458 |
scholar | rs61733458 |
rs61733458 | |
pharmgkb | rs61733458 |
gwascentral | rs61733458 |
openSNP | rs61733458 |
23andMe | rs61733458 |
SNPshot | rs61733458 |
SNPdbe | rs61733458 |
MSV3d | rs61733458 |
GWAS Ctlg | rs61733458 |
GMAF | 0.01102 |
Max Magnitude | 1 |
aka c.1652C>T, p.Thr551Ile and T551I
Minor allele frequency of about 2-3% in most populations argues against this allele being pathogenic (when inherited recessively) for ferroxidase deficiency as indicated in ClinVar, given a stated incidence of less than 1 in 100,000.
ClinVar | |
---|---|
Risk | Rs61733458(A;A) |
Alt | Rs61733458(A;A) |
Reference | Rs61733458(G;G) |
Significance | Other |
Disease | Deficiency of ferroxidase not specified |
Variation | info |
Gene | CP |
CLNDBN | Deficiency of ferroxidase not specified |
Reversed | 0 |
HGVS | NC_000003.11:g.148916215G>A |
CLNSRC | ClinVar GeneReviews |
CLNACC | RCV000034952.2, RCV000116816.2, |