rs6477872
From SNPedia
| Orientation | plus |
| Stabilized | plus |
| Geno | Mag | Summary |
|---|---|---|
| (T;T) | 0 | common/normal |
| Make rs6477872(C;C) |
| Make rs6477872(C;T) |
| Reference | GRCh38 38.1/141 |
| Chromosome | 9 |
| Position | 97069874 |
| Gene | TCEA1P1 |
| is a | snp |
| is | mentioned by |
| dbSNP | rs6477872 |
| dbSNP (classic) | rs6477872 |
| ClinGen | rs6477872 |
| ebi | rs6477872 |
| HLI | rs6477872 |
| Exac | rs6477872 |
| Gnomad | rs6477872 |
| Varsome | rs6477872 |
| LitVar | rs6477872 |
| Map | rs6477872 |
| PheGenI | rs6477872 |
| Biobank | rs6477872 |
| 1000 genomes | rs6477872 |
| hgdp | rs6477872 |
| ensembl | rs6477872 |
| geneview | rs6477872 |
| scholar | rs6477872 |
| rs6477872 | |
| pharmgkb | rs6477872 |
| gwascentral | rs6477872 |
| openSNP | rs6477872 |
| 23andMe | rs6477872 |
| SNPshot | rs6477872 |
| SNPdbe | rs6477872 |
| MSV3d | rs6477872 |
| GWAS Ctlg | rs6477872 |
| GMAF | 0.174 |
| Max Magnitude | 0 |
| ? | (C;C) (C;T) (T;T) | 28 |
|---|---|---|
|
| ||
| Rs6477872 | |
|---|---|
| PubMed | [PMID 17869649] |
| Affy Probeset | SNP_A-2014384 |
| Affy Orientation | same |
| On GW 5.0 | |
| Alleles A/B | C/T |
| Ancestral | T |
| Population | German |
| Allele | C |
| Case Freq. | 0.38 |
| Control Freq. | 0.31 |
| Odds Ratio Het | |
| Odds Ratio Hom | |
| Odds Ratio All | 1.38 |
| Disease | Myasthenia gravis (MG) |
rs6477872 is in linkage disequilibrium with a polymorphism that increases susceptibility to Myasthenia gravis 1.38 times for carriers of the C allele [PMID 17869649]
rs6477872 is in linkage disequilibrium with a polymorphism that increases susceptibility to Myasthenia gravis, early onset 1.82 times for carriers of the C allele [PMID 17869649]
