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rs73885319

From SNPedia

Orientationplus
Stabilizedplus
Geno Mag Summary
(A;A) 0 common in complete genomics
(A;G) 4.5 ~3x higher risk for end-stage renal disease
(G;G) 5.5 ~6x higher risk for end-stage renal disease
ReferenceGRCh38 38.1/141
Chromosome22
Position36265860
GeneAPOL1
is asnp
is mentioned by
dbSNPrs73885319
dbSNP (classic)rs73885319
ClinGenrs73885319
ebirs73885319
HLIrs73885319
Exacrs73885319
Gnomadrs73885319
Varsomers73885319
LitVarrs73885319
Maprs73885319
PheGenIrs73885319
Biobankrs73885319
1000 genomesrs73885319
hgdprs73885319
ensemblrs73885319
geneviewrs73885319
scholarrs73885319
googlers73885319
pharmgkbrs73885319
gwascentralrs73885319
openSNPrs73885319
23andMers73885319
SNPshotrs73885319
SNPdbers73885319
MSV3drs73885319
GWAS Ctlgrs73885319
GMAF0.04959
Max Magnitude5.5

The derived allele of coding SNP rs73885319 (p.S342G) defines, together with the derived allele of coding SNP rs60910145 (p.I384M), the APOL1 G1 allele. This allele has been shown to associate with kidney disease while conferring protection against Trypanosoma brucei rhodesiense. [PMID 20647424OA-icon.png]

gs329 represents G1/G2 "double heterozygotes".

OMIM603743
DescAPOLIPOPROTEIN L-I; APOL1
Variant
Relatedalso
OMIM603743
Desc
Variant0001
Relatedalso

[PMID 20635188OA-icon.png] Missense mutations in the APOL1 gene are highly associated with end stage kidney disease risk previously attributed to the MYH9 gene.

ClinVar
Risk Rs73885319(G;G)
Alt Rs73885319(G;G)
Reference Rs73885319(A;A)
Significance Other
Disease Focal segmental glomerulosclerosis 4
Variation info
Gene APOL1
CLNDBN Focal segmental glomerulosclerosis 4, susceptibility to
Reversed 0
HGVS NC_000022.10:g.36661906A>G
CLNSRC OMIM Allelic Variant
CLNACC RCV000006453.3, RCV000408955.1,


[PMID 22956460OA-icon.png] Genetic variation in APOL1 and MYH9 genes is associated with chronic kidney disease among Nigerians.

[PMID 25921719OA-icon.png] APOL1 Genotype and Glomerular and Tubular Kidney Injury in Women With HIV

[PMID 26025194OA-icon.png] APOL1 G1 genotype modifies the association between HDLC and kidney function in African Americans


[PMID 32354559] Association of Genetic Polymorphisms of TGF-β1, HMOX1, and APOL1 With CKD in Nigerian Patients With and Without HIV.