rs780936696
From SNPedia
Orientation | plus |
Stabilized | plus |
Geno | Mag | Summary |
---|---|---|
(A;A) | 0 | common in clinvar |
(A;T) | 3 | Carrier of a Canavan disease mutation |
(T;T) | 8 | Canavan disease (predicted) |
Reference | GRCh38.p2 38.2/144 |
Chromosome | 17 |
Position | 3481601 |
Gene | ASPA, SPATA22 |
is a | snp |
is | mentioned by |
dbSNP | rs780936696 |
dbSNP (classic) | rs780936696 |
ClinGen | rs780936696 |
ebi | rs780936696 |
HLI | rs780936696 |
Exac | rs780936696 |
Gnomad | rs780936696 |
Varsome | rs780936696 |
LitVar | rs780936696 |
Map | rs780936696 |
PheGenI | rs780936696 |
Biobank | rs780936696 |
1000 genomes | rs780936696 |
hgdp | rs780936696 |
ensembl | rs780936696 |
geneview | rs780936696 |
scholar | rs780936696 |
rs780936696 | |
pharmgkb | rs780936696 |
gwascentral | rs780936696 |
openSNP | rs780936696 |
23andMe | rs780936696 |
SNPshot | rs780936696 |
SNPdbe | rs780936696 |
MSV3d | rs780936696 |
GWAS Ctlg | rs780936696 |
Max Magnitude | 8 |
ASPA gene variant, known as c.237-2A>T
Note that one source in ClinVar indicates that the minor allele is a pathogenic mutation (for Canavan disease), while another source indicates the minor allele is of uncertain significance.
ClinVar | |
---|---|
Risk | Rs780936696(T;T) |
Alt | Rs780936696(T;T) |
Reference | Rs780936696(A;A) |
Significance | Other |
Disease | Spongy degeneration of central nervous system |
Variation | info |
Gene | SPATA22 ASPA |
CLNDBN | Spongy degeneration of central nervous system |
Reversed | 0 |
HGVS | NC_000017.10:g.3384895A>T |
CLNSRC | |
CLNACC | RCV000169526.2, |