rs80359530
From SNPedia
Orientation | plus |
Stabilized | plus |
Geno | Mag | Summary |
---|---|---|
(-;CT) | 6 | Possible miscall in Ancestry data; otherwise, BRCA2 variant considered pathogenic for breast cancer |
(-;CTCT) | 6 | Possible miscall in Ancestry data; otherwise, BRCA2 variant considered pathogenic for breast cancer |
(CT;CT) | 0 | common in clinvar |
(CTCT;CTCT) | 0 | common/normal |
Make rs80359530(-;-) |
Reference | GRCh38 38.1/142 |
Chromosome | 13 |
Position | 32340073 |
Gene | BRCA2 |
is a | snp |
is | mentioned by |
dbSNP | rs80359530 |
dbSNP (classic) | rs80359530 |
ClinGen | rs80359530 |
ebi | rs80359530 |
HLI | rs80359530 |
Exac | rs80359530 |
Gnomad | rs80359530 |
Varsome | rs80359530 |
LitVar | rs80359530 |
Map | rs80359530 |
PheGenI | rs80359530 |
Biobank | rs80359530 |
1000 genomes | rs80359530 |
hgdp | rs80359530 |
ensembl | rs80359530 |
geneview | rs80359530 |
scholar | rs80359530 |
rs80359530 | |
pharmgkb | rs80359530 |
gwascentral | rs80359530 |
openSNP | rs80359530 |
23andMe | rs80359530 |
SNPshot | rs80359530 |
SNPdbe | rs80359530 |
MSV3d | rs80359530 |
GWAS Ctlg | rs80359530 |
Merged from | Rs80359531 |
Max Magnitude | 6 |
rs80359530, also known as 5946delCT, c.5718_5719delCT and p.Asn1906_Ser1907=fs, and also c.5718_5721delCTCT, is a variant in the BRCA2 gene considered pathogenic for breast cancer in ClinVar.
ClinVar | |
---|---|
Risk | rs80359530(-;-) |
Alt | rs80359530(-;-) |
Reference | Rs80359530(CT;CT) |
Significance | Pathogenic |
Disease | Breast-ovarian cancer Hereditary breast and ovarian cancer syndrome Hereditary cancer-predisposing syndrome not provided Familial cancer of breast |
Variation | info |
Gene | BRCA2 |
CLNDBN | Breast-ovarian cancer, familial 2 Hereditary breast and ovarian cancer syndrome Hereditary cancer-predisposing syndrome not provided Familial cancer of breast |
Reversed | 0 |
HGVS | NC_000013.10:g.32914214_32914215delCT |
CLNSRC | Breast Cancer Information Core (BRCA2) OMIM Allelic Variant |
CLNACC | RCV000009905.15, RCV000044728.8, RCV000131120.3, RCV000160297.4, RCV000461157.1, |