rs9469220
Orientation | plus |
Stabilized | plus |
Geno | Mag | Summary |
---|---|---|
(A;A) | 1.5x risk of Crohn's disease | |
(A;G) | 1.1x risk of Crohn's disease | |
(C;C) | 0 | |
(G;G) | 0 | normal |
Reference | GRCh38 38.1/141 |
Chromosome | 6 |
Position | 32690533 |
is a | snp |
is | mentioned by |
dbSNP | rs9469220 |
dbSNP (classic) | rs9469220 |
ClinGen | rs9469220 |
ebi | rs9469220 |
HLI | rs9469220 |
Exac | rs9469220 |
Gnomad | rs9469220 |
Varsome | rs9469220 |
LitVar | rs9469220 |
Map | rs9469220 |
PheGenI | rs9469220 |
Biobank | rs9469220 |
1000 genomes | rs9469220 |
hgdp | rs9469220 |
ensembl | rs9469220 |
geneview | rs9469220 |
scholar | rs9469220 |
rs9469220 | |
pharmgkb | rs9469220 |
gwascentral | rs9469220 |
openSNP | rs9469220 |
23andMe | rs9469220 |
SNPshot | rs9469220 |
SNPdbe | rs9469220 |
MSV3d | rs9469220 |
GWAS Ctlg | rs9469220 |
GMAF | 0.4192 |
Max Magnitude | 0 |
? | (A;A) (A;G) (G;G) | 28 |
---|---|---|
|
rs9469220 has been reported in a large study to be associated with Crohn's disease.
The risk allele (oriented to the dbSNP entry) is (A); the odds ratio associated with heterozygotes is 1.14 (CI 0.98-1.32), and for homozygotes, 1.52 (CI 1.28-1.79). [PMID 17554300]
GWAS | |
---|---|
SNP | rs9469220 |
PubMedID | [PMID 17554300] |
Condition | Crohn's disease |
Gene | NR |
Risk Allele | A |
pValue | 2.00E-006 |
OR | 1.14 |
95% CI | 0.98-1.32 |
[PMID 22615847] Association Analysis of the Extended MHC Region in Celiac Disease Implicates Multiple Independent Susceptibility Loci
[PMID 17660530] Risk alleles for multiple sclerosis identified by a genomewide study.
[PMID 20369022] Candidate causal regulatory effects by integration of expression QTLs with complex trait genetic associations.
[PMID 20546594] An application of Random Forests to a genome-wide association dataset: methodological considerations & new findings.
GWAS snp | |
---|---|
PMID | [PMID 23146381] |
Trait | IgE levels |
Title | A meta-analysis of genome-wide association studies for serum total IgE in diverse study populations. |
Risk Allele | G |
P-val | 2E-7 |
Odds Ratio | .09 [0.05-0.12] unit decrease |
[PMID 24352087] Candidate genes involved in beneficial or adverse responses to commonly eaten brassica vegetables in a New Zealand Crohn's disease cohort
[PMID 25308886] Functional relevance for multiple sclerosis-associated genetic variants