rs9550642
From SNPedia
Orientation | plus |
Stabilized | plus |
Geno | Mag | Summary |
---|---|---|
(A;A) | 2.2x risk | |
(A;G) | 1.3x risk | |
(G;G) | 0 | normal |
Reference | GRCh38 38.1/141 |
Chromosome | 13 |
Position | 20375953 |
Gene | LOC100133618 |
is a | snp |
is | mentioned by |
dbSNP | rs9550642 |
dbSNP (classic) | rs9550642 |
ClinGen | rs9550642 |
ebi | rs9550642 |
HLI | rs9550642 |
Exac | rs9550642 |
Gnomad | rs9550642 |
Varsome | rs9550642 |
LitVar | rs9550642 |
Map | rs9550642 |
PheGenI | rs9550642 |
Biobank | rs9550642 |
1000 genomes | rs9550642 |
hgdp | rs9550642 |
ensembl | rs9550642 |
geneview | rs9550642 |
scholar | rs9550642 |
rs9550642 | |
pharmgkb | rs9550642 |
gwascentral | rs9550642 |
openSNP | rs9550642 |
23andMe | rs9550642 |
SNPshot | rs9550642 |
SNPdbe | rs9550642 |
MSV3d | rs9550642 |
GWAS Ctlg | rs9550642 |
GMAF | 0.1368 |
Max Magnitude | 0 |
? | (A;A) (A;G) (G;G) | 28 |
---|---|---|
|
rs9550642 has been reported in a large study to be associated with rheumatoid arthritis.
The risk allele (oriented to the dbSNP entry) is (A); the odds ratio associated with heterozygotes is 1.34 (CI 1.15-1.56), and for homozygotes, 2.23 (CI 1.21-4.13). [PMID 17554300]
[PMID 18794857] Rheumatoid arthritis susceptibility loci at chromosomes 10p15, 12q13 and 22q13.
[PMID 20017963] Representation of genetic association via attributable familial relative risks in order to identify polymorphisms functionally relevant to rheumatoid arthritis.