rs11782652
From SNPedia
A 2013 GWAS study concluded that at the 8q21 locus, the strongest associated SNP with ovarian cancer was rs11782652, located in the first intron of the CHMP4C gene. rs11782652(G), with a frequency of 0.07 among European population, is the risk allele, with an OR of 1.19 (p<10e-9).[PMID 23535730
]
| Orientation | plus |
| Stabilized | plus |
| Geno | Mag | Summary |
|---|---|---|
| (A;A) | 0 |
| Make rs11782652(A;G) |
| Make rs11782652(G;G) |
| Reference | GRCh38 38.1/141 |
| Chromosome | 8 |
| Position | 81741409 |
| Gene | CHMP4C |
| is a | snp |
| is | mentioned by |
| dbSNP | rs11782652 |
| dbSNP (classic) | rs11782652 |
| ClinGen | rs11782652 |
| ebi | rs11782652 |
| HLI | rs11782652 |
| Exac | rs11782652 |
| Gnomad | rs11782652 |
| Varsome | rs11782652 |
| LitVar | rs11782652 |
| Map | rs11782652 |
| PheGenI | rs11782652 |
| Biobank | rs11782652 |
| 1000 genomes | rs11782652 |
| hgdp | rs11782652 |
| ensembl | rs11782652 |
| geneview | rs11782652 |
| scholar | rs11782652 |
| rs11782652 | |
| pharmgkb | rs11782652 |
| gwascentral | rs11782652 |
| openSNP | rs11782652 |
| 23andMe | rs11782652 |
| SNPshot | rs11782652 |
| SNPdbe | rs11782652 |
| MSV3d | rs11782652 |
| GWAS Ctlg | rs11782652 |
| GMAF | 0.0528 |
| Max Magnitude | 0 |
| ? | (A;A) (A;G) (G;G) | 28 |
|---|---|---|
|
| ||
| GWAS snp | |
|---|---|
| PMID | [PMID 23535730]
|
| Trait | Ovarian cancer |
| Title | GWAS meta-analysis and replication identifies three new susceptibility loci for ovarian cancer. |
| Risk Allele | G |
| P-val | 6E-9 |
| Odds Ratio | 1.19 [1.12-1.26] |
