rs35572355
From SNPedia
Orientation | plus |
Stabilized | plus |
Geno | Mag | Summary |
---|---|---|
(A;G) | 5 | Possibly pathogenic for hereditary cancer-predisposing syndrome, but note lack of consensus |
(G;G) | 0 | common in clinvar |
Make rs35572355(A;A) |
Reference | GRCh38 38.1/141 |
Chromosome | 16 |
Position | 68833344 |
Gene | CDH1 |
is a | snp |
is | mentioned by |
dbSNP | rs35572355 |
dbSNP (classic) | rs35572355 |
ClinGen | rs35572355 |
ebi | rs35572355 |
HLI | rs35572355 |
Exac | rs35572355 |
Gnomad | rs35572355 |
Varsome | rs35572355 |
LitVar | rs35572355 |
Map | rs35572355 |
PheGenI | rs35572355 |
Biobank | rs35572355 |
1000 genomes | rs35572355 |
hgdp | rs35572355 |
ensembl | rs35572355 |
geneview | rs35572355 |
scholar | rs35572355 |
rs35572355 | |
pharmgkb | rs35572355 |
gwascentral | rs35572355 |
openSNP | rs35572355 |
23andMe | rs35572355 |
SNPshot | rs35572355 |
SNPdbe | rs35572355 |
MSV3d | rs35572355 |
GWAS Ctlg | rs35572355 |
GMAF | 0.0009183 |
Max Magnitude | 5 |
aka c.2494G>A (p.Val832Met)
Note that different clinical labs have come to different conclusions about the pathogenicity of this variant. As summarized in this blog post, classifications from eight different labs varied from benign (1 lab) to pathogenic (3 labs) with other labs designating it's clinical significance as uncertain.
ClinVar | |
---|---|
Risk | rs35572355(A;A) rs35572355(C;C) |
Alt | rs35572355(A;A) rs35572355(C;C) |
Reference | Rs35572355(G;G) |
Significance | Other |
Disease | Hereditary diffuse gastric cancer Hereditary cancer-predisposing syndrome not specified Neoplasm of stomach |
Variation | info |
Gene | CDH1 |
CLNDBN | Hereditary diffuse gastric cancer Hereditary cancer-predisposing syndrome not specified Neoplasm of stomach |
Reversed | 0 |
HGVS | NC_000016.9:g.68867247G>A |
CLNSRC | OMIM Allelic Variant UniProtKB (protein) |
CLNACC | RCV000013033.21, RCV000115856.5, RCV000120506.2, RCV000148456.1, |