rs397509217
From SNPedia
Orientation | minus |
Stabilized | minus |
Geno | Mag | Summary |
---|---|---|
(-;-) | 0 | common in clinvar |
(-;T) | 6 | BRCA1 variant considered pathogenic for breast cancer |
(-;TT) | 6 | BRCA1 variant considered pathogenic for breast cancer |
Make rs397509217(T;T) |
Reference | GRCh38 38.1/141 |
Chromosome | 17 |
Position | 43067654 |
Gene | BRCA1 |
is a | snp |
is | mentioned by |
dbSNP | rs397509217 |
dbSNP (classic) | rs397509217 |
ClinGen | rs397509217 |
ebi | rs397509217 |
HLI | rs397509217 |
Exac | rs397509217 |
Gnomad | rs397509217 |
Varsome | rs397509217 |
LitVar | rs397509217 |
Map | rs397509217 |
PheGenI | rs397509217 |
Biobank | rs397509217 |
1000 genomes | rs397509217 |
hgdp | rs397509217 |
ensembl | rs397509217 |
geneview | rs397509217 |
scholar | rs397509217 |
rs397509217 | |
pharmgkb | rs397509217 |
gwascentral | rs397509217 |
openSNP | rs397509217 |
23andMe | rs397509217 |
SNPshot | rs397509217 |
SNPdbe | rs397509217 |
MSV3d | rs397509217 |
GWAS Ctlg | rs397509217 |
Max Magnitude | 6 |
rs397509217 represents three variants in the BRCA1 gene, all of which are considered pathogenic for breast cancer in ClinVar. These include c.5027delT, c.5026_5027delTT, and c.5027dupT.
ClinVar | |
---|---|
Risk | rs397509217(T;T) |
Alt | rs397509217(T;T) |
Reference | Rs397509217(-;-) |
Significance | Pathogenic |
Disease | Familial cancer of breast Breast-ovarian cancer |
Variation | info |
Gene | BRCA1 |
CLNDBN | Familial cancer of breast Breast-ovarian cancer, familial 1 |
Reversed | 1 |
HGVS | NC_000017.10:g.41219672dupA |
CLNSRC | ClinVar |
CLNACC | RCV000048740.2, RCV000241011.1, |