rs5945619
Orientation | plus |
Stabilized | plus |
Make rs5945619(C;C) |
Make rs5945619(C;T) |
Make rs5945619(T;T) |
Reference | GRCh38 38.1/141 |
Chromosome | X |
Position | 51498820 |
is a | snp |
is | mentioned by |
dbSNP | rs5945619 |
dbSNP (classic) | rs5945619 |
ClinGen | rs5945619 |
ebi | rs5945619 |
HLI | rs5945619 |
Exac | rs5945619 |
Gnomad | rs5945619 |
Varsome | rs5945619 |
LitVar | rs5945619 |
Map | rs5945619 |
PheGenI | rs5945619 |
Biobank | rs5945619 |
1000 genomes | rs5945619 |
hgdp | rs5945619 |
ensembl | rs5945619 |
geneview | rs5945619 |
scholar | rs5945619 |
rs5945619 | |
pharmgkb | rs5945619 |
gwascentral | rs5945619 |
openSNP | rs5945619 |
23andMe | rs5945619 |
SNPshot | rs5945619 |
SNPdbe | rs5945619 |
MSV3d | rs5945619 |
GWAS Ctlg | rs5945619 |
GMAF | 0.2618 |
Max Magnitude | 0 |
? | (C;C) (C;T) (T;T) | 28 |
---|---|---|
|
cancer-genetics these snps influence genetic risk for prostate cancer
- the haplotype rs6983267 rs1016343 rs4242384
- rs7501939
- rs1859962
- rs2660753
- rs9364554
- rs6465657
- rs10993994
- rs7931342
- rs2735839
- rs5945619
- rs10993994
[PMID 19336566] Replication of the 10q11 and Xp11 Prostate Cancer Risk Variants: Results from a Utah Pedigree-Based Study.
[PMID 19366831] Analysis of Recently Identified Prostate Cancer Susceptibility Loci in a Population-based Study: Associations with Family History and Clinical Features
GWAS snp | |
---|---|
PMID | [PMID 18264097] |
Trait | Prostate cancer |
Title | Multiple newly identified loci associated with prostate cancer susceptibility |
Risk Allele | C |
P-val | 2.0000000000000001E-9 |
Odds Ratio | 1.19 [1.07-1.31] |
[PMID 19549809] Fine-Mapping and Family-Based Association Analyses of Prostate Cancer Risk Variants at Xp11
[PMID 18708398] Multiple novel prostate cancer predisposition loci confirmed by an international study: the PRACTICAL Consortium.
[PMID 18794092] Association of prostate cancer risk variants with clinicopathologic characteristics of the disease.
[PMID 18974127] Association study of prostate cancer susceptibility variants with risks of invasive ovarian, breast, and colorectal cancer.
[PMID 19104501] Prostate cancer genomics: towards a new understanding.
[PMID 19434657] Individual and cumulative effect of prostate cancer risk-associated variants on clinicopathologic variables in 5,895 prostate cancer patients.
[PMID 19549807] Prostate cancer risk associated loci in African Americans.
[PMID 19639606] Correcting "winner's curse" in odds ratios from genomewide association findings for major complex human diseases.
[PMID 20039378] Estimation of genotype relative risks from pedigree data by retrospective likelihoods.
[PMID 20690139] Meta-analysis of genome-wide and replication association studies on prostate cancer.
[PMID 21071540] Validation of genome-wide prostate cancer associations in men of African descent.
[PMID 21390317] Characterizing associations and SNP-environment interactions for GWAS-identified prostate cancer risk markers--results from BPC3.
[PMID 21538423] Early onset prostate cancer has a significant genetic component.
- Is a snp
- In dbSNP
- SNPs on chromosome X
- Has genotype
- Has population
- Uses omim
- On chip 23andMe v1
- On chip 23andMe v2
- On chip 23andMe v3
- On chip 23andMe v4
- On chip Affy GenomeWide 6
- On chip Ancestry v2
- On chip FTDNA2
- On chip FTDNA
- On chip HumanOmni1Quad
- On chip Illumina Human 1M
- On chip 23andMe v5
- On chip Ancestry v2c
- On chip Ancestry v2d