rs9303277
Orientation | plus |
Stabilized | plus |
Geno | Mag | Summary |
---|---|---|
(C;C) | 1 | Normal risk of developing primary biliary cirrhosis |
(C;T) | 1.5 | 1.46x Slightly increased risk of developing primary biliary cirrhosis |
(T;T) | 2 | 1.46x Increased risk of developing primary biliary cirrhosis |
Reference | GRCh38 38.1/141 |
Chromosome | 17 |
Position | 39820216 |
Gene | IKZF3 |
is a | snp |
is | mentioned by |
dbSNP | rs9303277 |
dbSNP (classic) | rs9303277 |
ClinGen | rs9303277 |
ebi | rs9303277 |
HLI | rs9303277 |
Exac | rs9303277 |
Gnomad | rs9303277 |
Varsome | rs9303277 |
LitVar | rs9303277 |
Map | rs9303277 |
PheGenI | rs9303277 |
Biobank | rs9303277 |
1000 genomes | rs9303277 |
hgdp | rs9303277 |
ensembl | rs9303277 |
geneview | rs9303277 |
scholar | rs9303277 |
rs9303277 | |
pharmgkb | rs9303277 |
gwascentral | rs9303277 |
openSNP | rs9303277 |
23andMe | rs9303277 |
SNPshot | rs9303277 |
SNPdbe | rs9303277 |
MSV3d | rs9303277 |
GWAS Ctlg | rs9303277 |
GMAF | 0.4858 |
Max Magnitude | 2 |
? | (C;C) (C;T) (T;T) | 28 |
---|---|---|
|
GWAS snp | |
---|---|
PMID | [PMID 20639880] |
Trait | Primary biliary cirrhosis |
Title | Genome-wide meta-analyses identify three loci associated with primary biliary cirrhosis |
Risk Allele | T |
P-val | 2E-9 |
Odds Ratio | 1.38 [NR] |
[PMID 21985515] Association of genetic variants in chromosome 17q21 and adult-onset asthma in a Chinese Han population
[PMID 19426955] Genome-wide association analysis identifies PDE4D as an asthma-susceptibility gene.
[PMID 19458352] Primary biliary cirrhosis associated with HLA, IL12A, and IL12RB2 variants.
[PMID 19714205] Genome-wide association study implicates chromosome 9q21.31 as a susceptibility locus for asthma in mexican children.
[PMID 19732864] Allele-specific chromatin remodeling in the ZPBP2/GSDMB/ORMDL3 locus associated with the risk of asthma and autoimmune disease.
[PMID 20698975] Asthma-susceptibility variants identified using probands in case-control and family-based analyses.
GWAS snp | |
---|---|
PMID | [PMID 23000144] |
Trait | Primary biliary cirrhosis |
Title | Genome-wide association study identifies TNFSF15 and POU2AF1 as susceptibility loci for primary biliary cirrhosis in the Japanese population. |
Risk Allele | T |
P-val | 4E-9 |
Odds Ratio | 1.44 [1.28-1.63] |
[PMID 23154084] Examination of the relationship between variation at 17q21 and childhood wheeze phenotypes
[PMID 23157251] Variants in the 17q21 asthma susceptibility locus are associated with allergic rhinitis in the Japanese population
GWAS snp | |
---|---|
PMID | [PMID 23740937] |
Trait | Systemic lupus erythematosus and Systemic sclerosis |
Title | A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci. |
Risk Allele | |
P-val | 7E-6 |
Odds Ratio | 1.19 [NR] |
- Is a snp
- In dbSNP
- SNPs on chromosome 17
- Has genotype
- Has population
- Uses omim
- On chip 23andMe v1
- On chip 23andMe v2
- On chip 23andMe v3
- On chip 23andMe v4
- On chip Affy GenomeWide 6
- On chip Ancestry v2
- On chip FTDNA2
- On chip FTDNA
- On chip HumanOmni1Quad
- On chip Illumina Human 1M
- On chip 23andMe v5
- On chip Ancestry v2c
- On chip Ancestry v2d