rs12150220
Orientation | plus |
Stabilized | plus |
Geno | Mag | Summary |
---|---|---|
(A;A) | slightly increased risk for several autoimmune diseases | |
(A;T) | slightly increased risk for several autoimmune diseases | |
(T;T) | normal |
Reference | GRCh38 38.1/141 |
Chromosome | 17 |
Position | 5582047 |
Gene | NLRP1 |
is a | snp |
is | mentioned by |
dbSNP | rs12150220 |
dbSNP (classic) | rs12150220 |
ClinGen | rs12150220 |
ebi | rs12150220 |
HLI | rs12150220 |
Exac | rs12150220 |
Gnomad | rs12150220 |
Varsome | rs12150220 |
LitVar | rs12150220 |
Map | rs12150220 |
PheGenI | rs12150220 |
Biobank | rs12150220 |
1000 genomes | rs12150220 |
hgdp | rs12150220 |
ensembl | rs12150220 |
geneview | rs12150220 |
scholar | rs12150220 |
rs12150220 | |
pharmgkb | rs12150220 |
gwascentral | rs12150220 |
openSNP | rs12150220 |
23andMe | rs12150220 |
SNPshot | rs12150220 |
SNPdbe | rs12150220 |
MSV3d | rs12150220 |
GWAS Ctlg | rs12150220 |
GMAF | 0.2314 |
Max Magnitude | 0 |
? | (A;A) (A;T) (T;T) | 28 |
---|---|---|
|
rs12150220 is a SNP in the NLRP1 gene, which encodes the NACHT leucine-rich-repeat protein 1. SNPs in this gene may be involved in higher risk for several autoimmune diseases.
In a study investigating large patient cohorts from six different autoimmune diseases, including autoimmune Addison's disease (n=333 patients), type-1 diabetes (n=1086), multiple sclerosis (n=502), rheumatoid arthritis (n=945), systemic lupus erythematosus (n=156) and juvenile idiopathic arthritis (n=505), plus 3273 healthy controls, the rs12150220(A) allele was associated with higher risk for both autoimmune Addison's disease (odds ratio 1.25, CI: 1.06-1.49, p = 0.007) and type-1 diabetes (odds ratio 1.15, CI: 1.04-1.27, p = 0.005).[PMID 18946481]
[PMID 20152874] A coding variant in NLRP1is associated with autoimmune Addison;s disease
[PMID 21245836] The Missense Variation Q705K in CIAS1/NALP3/NLRP3 Gene and an NLRP1 Haplotype Are Associated With Celiac Disease
ClinVar | |
---|---|
Risk | Rs12150220(T;T) |
Alt | Rs12150220(T;T) |
Reference | Rs12150220(A;A) |
Significance | Other |
Disease | Vitiligo-associated multiple autoimmune disease susceptibility 1 |
Variation | info |
Gene | NLRP1 |
CLNDBN | Vitiligo-associated multiple autoimmune disease susceptibility 1 |
Reversed | 0 |
HGVS | NC_000017.10:g.5485367A>T |
CLNSRC | OMIM Allelic Variant UniProtKB (protein) |
CLNACC | RCV000004380.3, |
[PMID 21149496] NLRP1 influences the systemic sclerosis phenotype: a new clue for the contribution of innate immunity in systemic sclerosis-related fibrosing alveolitis pathogenesis.
[PMID 21448414] Molecular mechanism of glucocorticoid resistance in inflammatory bowel disease.
[PMID 22235789] Polimorphisms in inflammasome genes are involved in the predisposition to systemic lupus erythematosus.
[PMID 22524199] Inflammasome polymorphisms confer susceptibility to sporadic malignant melanoma.
[PMID 23922971] Genetic associations with diabetes: meta-analyses of 10 candidate polymorphisms
[PMID 23374100] Polymorphisms in NLRP1 gene and susceptibility to autoimmune thyroid disease.
[PMID 23773036] Association of NLRP1 genetic variants and mRNA overexpression with generalized vitiligo and disease activity in a Gujarat population.
[PMID 31448710] Frequency of Inflammasome Nlrp1/Nlrp3 Gene Receptor Polimorphisms And The Interleukins IL-1ß/IL-18 Gene Polymorphisms And Their Association With Severity Score In Sickle Cell Disease Patients.