rs6544713
From SNPedia
Orientation | plus |
Stabilized | plus |
Make rs6544713(C;C) |
Make rs6544713(C;T) |
Make rs6544713(T;T) |
Reference | GRCh38 38.1/141 |
Chromosome | 2 |
Position | 43846742 |
Gene | ABCG8 |
is a | snp |
is | mentioned by |
dbSNP | rs6544713 |
dbSNP (classic) | rs6544713 |
ClinGen | rs6544713 |
ebi | rs6544713 |
HLI | rs6544713 |
Exac | rs6544713 |
Gnomad | rs6544713 |
Varsome | rs6544713 |
LitVar | rs6544713 |
Map | rs6544713 |
PheGenI | rs6544713 |
Biobank | rs6544713 |
1000 genomes | rs6544713 |
hgdp | rs6544713 |
ensembl | rs6544713 |
geneview | rs6544713 |
scholar | rs6544713 |
rs6544713 | |
pharmgkb | rs6544713 |
gwascentral | rs6544713 |
openSNP | rs6544713 |
23andMe | rs6544713 |
SNPshot | rs6544713 |
SNPdbe | rs6544713 |
MSV3d | rs6544713 |
GWAS Ctlg | rs6544713 |
GMAF | 0.1736 |
Max Magnitude | 0 |
? | (C;C) (C;T) (T;T) | 28 |
---|---|---|
|
[PMID 23202125] Large-scale association analysis identifies new risk loci for coronary artery disease. per the 23andMe blog, the minor allele of this SNP (T) was associated with increased LDL cholesterol
SNP | Rarer allele | LDL | HDL | TG |
---|---|---|---|---|
rs6544713 | T | + | ||
rs2650000 | A | + | ||
rs471364 | C | - | ||
rs1800961 | T | - | ||
rs7679 | C | - | + | |
rs2967605 | T | - | ||
rs2409722 | T | - | ||
rs10903129 | A | - | - | - |
rs6756629 | A | - | + | - |
rs12670798 | C | + | + | + |
rs7395662 | A | - | + | + |
rs174570 | T | - | - | + |
rs2271293 | A | - | + | - |
rs2624265 | C | + | ||
rs2167079 | T | + | ||
rs9891572 | T | + | ||
rs4844614 | T | + | ||
rs5031002 | G | + |
GWAS snp | |
---|---|
PMID | [PMID 19060906] |
Trait | LDL cholesterol |
Title | Common variants at 30 loci contribute to polygenic dyslipidemia |
Risk Allele | T |
P-val | 2E-20 |
Odds Ratio | 0.15 [0.11-0.19] SD increase |
[PMID 23202125] Large-scale association analysis identifies new risk loci for coronary artery disease. [PMID 19951432] Analysis of recently identified dyslipidemia alleles reveals two loci that contribute to risk for carotid artery disease.
[PMID 19913121] Gene-centric association signals for lipids and apolipoproteins identified via the HumanCVD BeadChip.